thodg/libgit2

diff --git a/src/merge.c b/src/merge.c
index 64c8f11..f05e45c 100644
--- a/src/merge.c
+++ b/src/merge.c
@@ -49,6 +49,19 @@
 #define GIT_MERGE_INDEX_ENTRY_EXISTS(X)	((X).mode != 0)
 #define GIT_MERGE_INDEX_ENTRY_ISFILE(X) S_ISREG((X).mode)
 
+
+/** Internal merge flags. */
+enum {
+	/** The merge is for a virtual base in a recursive merge. */
+	GIT_MERGE__VIRTUAL_BASE = (1 << 31),
+};
+
+enum {
+	/** Accept the conflict file, staging it as the merge result. */
+	GIT_MERGE_FILE_FAVOR__CONFLICTED = 4,
+};
+
+
 typedef enum {
 	TREE_IDX_ANCESTOR = 0,
 	TREE_IDX_OURS = 1,
@@ -801,11 +814,9 @@ static int merge_conflict_resolve_automerge(
 	int *resolved,
 	git_merge_diff_list *diff_list,
 	const git_merge_diff *conflict,
-	unsigned int merge_file_favor,
-	unsigned int file_flags)
+	const git_merge_file_options *file_opts)
 {
 	const git_index_entry *ancestor = NULL, *ours = NULL, *theirs = NULL;
-	git_merge_file_options opts = GIT_MERGE_FILE_OPTIONS_INIT;
 	git_merge_file_result result = {0};
 	git_index_entry *index_entry;
 	git_odb *odb = NULL;
@@ -852,12 +863,9 @@ static int merge_conflict_resolve_automerge(
 	theirs = GIT_MERGE_INDEX_ENTRY_EXISTS(conflict->their_entry) ?
 		&conflict->their_entry : NULL;
 
-	opts.favor = merge_file_favor;
-	opts.flags = file_flags;
-
 	if ((error = git_repository_odb(&odb, diff_list->repo)) < 0 ||
-		(error = git_merge_file_from_index(&result, diff_list->repo, ancestor, ours, theirs, &opts)) < 0 ||
-		!result.automergeable ||
+		(error = git_merge_file_from_index(&result, diff_list->repo, ancestor, ours, theirs, file_opts)) < 0 ||
+		(!result.automergeable && !(file_opts->flags & GIT_MERGE_FILE_FAVOR__CONFLICTED)) ||
 		(error = git_odb_write(&automerge_oid, odb, result.ptr, result.len, GIT_OBJ_BLOB)) < 0)
 		goto done;
 
@@ -887,8 +895,7 @@ static int merge_conflict_resolve(
 	int *out,
 	git_merge_diff_list *diff_list,
 	const git_merge_diff *conflict,
-	unsigned int merge_file_favor,
-	unsigned int file_flags)
+	const git_merge_file_options *file_opts)
 {
 	int resolved = 0;
 	int error = 0;
@@ -904,8 +911,7 @@ static int merge_conflict_resolve(
 	if (!resolved && (error = merge_conflict_resolve_one_renamed(&resolved, diff_list, conflict)) < 0)
 		goto done;
 
-	if (!resolved && (error = merge_conflict_resolve_automerge(&resolved, diff_list, conflict,
-		merge_file_favor, file_flags)) < 0)
+	if (!resolved && (error = merge_conflict_resolve_automerge(&resolved, diff_list, conflict, file_opts)) < 0)
 		goto done;
 
 	*out = resolved;
@@ -1829,6 +1835,7 @@ int git_merge__iterators(
 		*empty_theirs = NULL;
 	git_merge_diff_list *diff_list;
 	git_merge_options opts;
+	git_merge_file_options file_opts = GIT_MERGE_FILE_OPTIONS_INIT;
 	git_merge_diff *conflict;
 	git_vector changes;
 	size_t i;
@@ -1844,6 +1851,17 @@ int git_merge__iterators(
 	if ((error = merge_normalize_opts(repo, &opts, given_opts)) < 0)
 		return error;
 
+	file_opts.favor = opts.file_favor;
+	file_opts.flags = opts.file_flags;
+
+	/* use the git-inspired labels when virtual base building */
+	if (opts.flags & GIT_MERGE__VIRTUAL_BASE) {
+		file_opts.ancestor_label = "merged common ancestors";
+		file_opts.our_label = "Temporary merge branch 1";
+		file_opts.their_label = "Temporary merge branch 2";
+		file_opts.flags |= GIT_MERGE_FILE_FAVOR__CONFLICTED;
+	}
+
 	diff_list = git_merge_diff_list__alloc(repo);
 	GITERR_CHECK_ALLOC(diff_list);
 
@@ -1862,7 +1880,8 @@ int git_merge__iterators(
 	git_vector_foreach(&changes, i, conflict) {
 		int resolved = 0;
 
-		if ((error = merge_conflict_resolve(&resolved, diff_list, conflict, opts.file_favor, opts.file_flags)) < 0)
+		if ((error = merge_conflict_resolve(
+			&resolved, diff_list, conflict, &file_opts)) < 0)
 			goto done;
 
 		if (!resolved) {
@@ -1962,16 +1981,27 @@ static int create_virtual_base(
 	git_repository *repo,
 	git_annotated_commit *one,
 	git_annotated_commit *two,
+	const git_merge_options *opts,
 	size_t recursion_level)
 {
 	git_annotated_commit *result = NULL;
 	git_index *index = NULL;
+	git_merge_options virtual_opts = GIT_MERGE_OPTIONS_INIT;
 
 	result = git__calloc(1, sizeof(git_annotated_commit));
 	GITERR_CHECK_ALLOC(result);
 
+	/* Conflicts in the merge base creation do not propagate to conflicts
+	 * in the result; the conflicted base will act as the common ancestor.
+	 */
+	if (opts)
+		memcpy(&virtual_opts, opts, sizeof(git_merge_options));
+
+	virtual_opts.flags &= ~GIT_MERGE_FAIL_ON_CONFLICT;
+	virtual_opts.flags |= GIT_MERGE__VIRTUAL_BASE;
+
 	if ((merge_annotated_commits(&index, NULL, repo, one, two,
-			recursion_level + 1, NULL)) < 0)
+			recursion_level + 1, &virtual_opts)) < 0)
 		return -1;
 
 	result->type = GIT_ANNOTATED_COMMIT_VIRTUAL;
@@ -1989,7 +2019,7 @@ static int compute_base(
 	git_repository *repo,
 	const git_annotated_commit *one,
 	const git_annotated_commit *two,
-	bool recurse,
+	const git_merge_options *opts,
 	size_t recursion_level)
 {
 	git_array_oid_t head_ids = GIT_ARRAY_INIT;
@@ -2007,7 +2037,7 @@ static int compute_base(
 	if ((error = git_merge_bases_many(&bases, repo,
 			head_ids.size, head_ids.ptr)) < 0 ||
 		(error = git_annotated_commit_lookup(&base, repo, &bases.ids[0])) < 0 ||
-		!recurse)
+		(opts && (opts->flags & GIT_MERGE_NO_RECURSIVE)))
 		goto done;
 
 	for (i = 1; i < bases.count; i++) {
@@ -2015,7 +2045,7 @@ static int compute_base(
 
 		if ((error = git_annotated_commit_lookup(&other, repo,
 				&bases.ids[i])) < 0 ||
-			(error = create_virtual_base(&new_base, repo, base, other,
+			(error = create_virtual_base(&new_base, repo, base, other, opts,
 				recursion_level)) < 0)
 			goto done;
 
@@ -2076,10 +2106,9 @@ static int merge_annotated_commits(
 {
 	git_annotated_commit *base = NULL;
 	git_iterator *base_iter = NULL, *our_iter = NULL, *their_iter = NULL;
-	bool recurse = !opts || !(opts->flags & GIT_MERGE_NO_RECURSIVE);
 	int error;
 
-    if ((error = compute_base(&base, repo, ours, theirs, recurse,
+    if ((error = compute_base(&base, repo, ours, theirs, opts,
 		recursion_level)) < 0) {
 
         if (error != GIT_ENOTFOUND)
diff --git a/tests/merge/conflict_data.h b/tests/merge/conflict_data.h
index b6c5133..e6394a9 100644
--- a/tests/merge/conflict_data.h
+++ b/tests/merge/conflict_data.h
@@ -70,3 +70,34 @@
 	"This is a mighty fine recipe!\n" \
 	">>>>>>> branchF-2\n"
 
+#define CONFLICTING_RECURSIVE_H1_TO_H2_WITH_DIFF3 \
+	"VEAL SOUP.\n" \
+	"\n" \
+	"<<<<<<< HEAD\n" \
+	"put into a pot three quarts of water, three onions cut small, one\n" \
+	"||||||| merged common ancestors\n" \
+	"<<<<<<< Temporary merge branch 1\n" \
+	"Put into a pot three quarts of water, THREE ONIONS CUT SMALL, one\n" \
+	"||||||| merged common ancestors\n" \
+	"Put into a pot three quarts of water, three onions cut small, one\n" \
+	"=======\n" \
+	"PUT INTO A POT three quarts of water, three onions cut small, one\n" \
+	">>>>>>> Temporary merge branch 2\n" \
+	"=======\n" \
+	"Put Into A Pot Three Quarts of Water, Three Onions Cut Small, One\n" \
+	">>>>>>> branchH-2\n" \
+	"spoonful of black pepper pounded, and two of salt, with two or three\n" \
+	"slices of lean ham; let it boil steadily two hours; skim it\n" \
+	"occasionally, then put into it a shin of veal, let it boil two hours\n" \
+	"longer; take out the slices of ham, and skim off the grease if any\n" \
+	"should rise, take a gill of good cream, mix with it two table-spoonsful\n" \
+	"of flour very nicely, and the yelks of two eggs beaten well, strain this\n" \
+	"mixture, and add some chopped parsley; pour some soup on by degrees,\n" \
+	"stir it well, and pour it into the pot, continuing to stir until it has\n" \
+	"boiled two or three minutes to take off the raw taste of the eggs. If\n" \
+	"the cream be not perfectly sweet, and the eggs quite new, the thickening\n" \
+	"will curdle in the soup. For a change you may put a dozen ripe tomatos\n" \
+	"in, first taking off their skins, by letting them stand a few minutes in\n" \
+	"hot water, when they may be easily peeled. When made in this way you\n" \
+	"must thicken it with the flour only. Any part of the veal may be used,\n" \
+	"but the shin or knuckle is the nicest.\n"
diff --git a/tests/merge/trees/recursive.c b/tests/merge/trees/recursive.c
index 1e5f613..693c910 100644
--- a/tests/merge/trees/recursive.c
+++ b/tests/merge/trees/recursive.c
@@ -297,3 +297,83 @@ void test_merge_trees_recursive__oh_so_many_levels_of_recursion(void)
 
 	git_index_free(index);
 }
+
+/* Branch H-1 and H-2 have two common ancestors (aa9e263, 6ef31d3).  The two
+ * ancestors themselves conflict.
+ */
+void test_merge_trees_recursive__conflicting_merge_base(void)
+{
+	git_index *index;
+	git_merge_options opts = GIT_MERGE_OPTIONS_INIT;
+
+	struct merge_index_entry merge_index_entries[] = {
+		{ 0100644, "ffb36e513f5fdf8a6ba850a20142676a2ac4807d", 0, "asparagus.txt" },
+		{ 0100644, "68f6182f4c85d39e1309d97c7e456156dc9c0096", 0, "beef.txt" },
+		{ 0100644, "4b7c5650008b2e747fe1809eeb5a1dde0e80850a", 0, "bouilli.txt" },
+		{ 0100644, "c4e6cca3ec6ae0148ed231f97257df8c311e015f", 0, "gravy.txt" },
+		{ 0100644, "68af1fc7407fd9addf1701a87eb1c95c7494c598", 0, "oyster.txt" },
+		{ 0100644, "3a66812fed1e03ea4a6a7ee28d8a57aec1ca6537", 1, "veal.txt" },
+		{ 0100644, "d604c75019c282144bdbbf3fd3462ba74b240efc", 2, "veal.txt" },
+		{ 0100644, "37a5054a9f9b4628e3924c5cb8f2147c6e2a3efc", 3, "veal.txt" },
+	};
+
+	cl_git_pass(merge_commits_from_branches(&index, repo, "branchH-1", "branchH-2", &opts));
+
+	cl_assert(merge_test_index(index, merge_index_entries, 8));
+
+	git_index_free(index);
+}
+
+/* Branch H-1 and H-2 have two common ancestors (aa9e263, 6ef31d3).  The two
+ * ancestors themselves conflict.  The generated common ancestor file will
+ * have diff3 style conflicts inside it.
+ */
+void test_merge_trees_recursive__conflicting_merge_base_with_diff3(void)
+{
+	git_index *index;
+	git_merge_options opts = GIT_MERGE_OPTIONS_INIT;
+
+	struct merge_index_entry merge_index_entries[] = {
+		{ 0100644, "ffb36e513f5fdf8a6ba850a20142676a2ac4807d", 0, "asparagus.txt" },
+		{ 0100644, "68f6182f4c85d39e1309d97c7e456156dc9c0096", 0, "beef.txt" },
+		{ 0100644, "4b7c5650008b2e747fe1809eeb5a1dde0e80850a", 0, "bouilli.txt" },
+		{ 0100644, "c4e6cca3ec6ae0148ed231f97257df8c311e015f", 0, "gravy.txt" },
+		{ 0100644, "68af1fc7407fd9addf1701a87eb1c95c7494c598", 0, "oyster.txt" },
+		{ 0100644, "cd17a91513f3aee9e44114d1ede67932dd41d2fc", 1, "veal.txt" },
+		{ 0100644, "d604c75019c282144bdbbf3fd3462ba74b240efc", 2, "veal.txt" },
+		{ 0100644, "37a5054a9f9b4628e3924c5cb8f2147c6e2a3efc", 3, "veal.txt" },
+	};
+
+	opts.file_flags |= GIT_MERGE_FILE_STYLE_DIFF3;
+
+	cl_git_pass(merge_commits_from_branches(&index, repo, "branchH-1", "branchH-2", &opts));
+
+	cl_assert(merge_test_index(index, merge_index_entries, 8));
+
+	git_index_free(index);
+}
+
+/* Branch I-1 and I-2 have two common ancestors (aa9e263, 6ef31d3).  The two
+ * ancestors themselves conflict, but when each was merged, the conflicts were
+ * resolved identically, thus merging I-1 into I-2 does not conflict.
+ */
+void test_merge_trees_recursive__conflicting_merge_base_since_resolved(void)
+{
+	git_index *index;
+	git_merge_options opts = GIT_MERGE_OPTIONS_INIT;
+
+	struct merge_index_entry merge_index_entries[] = {
+		{ 0100644, "ffb36e513f5fdf8a6ba850a20142676a2ac4807d", 0, "asparagus.txt" },
+		{ 0100644, "68f6182f4c85d39e1309d97c7e456156dc9c0096", 0, "beef.txt" },
+		{ 0100644, "4b7c5650008b2e747fe1809eeb5a1dde0e80850a", 0, "bouilli.txt" },
+		{ 0100644, "c4e6cca3ec6ae0148ed231f97257df8c311e015f", 0, "gravy.txt" },
+		{ 0100644, "68af1fc7407fd9addf1701a87eb1c95c7494c598", 0, "oyster.txt" },
+		{ 0100644, "a02d4fd126e0cc8fb46ee48cf38bad36d44f2dbc", 0, "veal.txt" },
+	};
+
+	cl_git_pass(merge_commits_from_branches(&index, repo, "branchI-1", "branchI-2", &opts));
+
+	cl_assert(merge_test_index(index, merge_index_entries, 6));
+
+	git_index_free(index);
+}
diff --git a/tests/merge/workdir/recursive.c b/tests/merge/workdir/recursive.c
index a732600..7951262 100644
--- a/tests/merge/workdir/recursive.c
+++ b/tests/merge/workdir/recursive.c
@@ -36,7 +36,6 @@ void test_merge_workdir_recursive__writes_conflict_with_virtual_base(void)
 		{ 0100644, "3855170cef875708da06ab9ad7fc6a73b531cda1", 3, "veal.txt" },
 	};
 
-
 	cl_git_pass(merge_branches(repo, GIT_REFS_HEADS_DIR "branchF-1", GIT_REFS_HEADS_DIR "branchF-2", &opts, NULL));
 
 	cl_git_pass(git_repository_index(&index, repo));
@@ -49,3 +48,37 @@ void test_merge_workdir_recursive__writes_conflict_with_virtual_base(void)
 	git_index_free(index);
 	git_buf_free(&conflicting_buf);
 }
+
+void test_merge_workdir_recursive__conflicting_merge_base_with_diff3(void)
+{
+	git_index *index;
+	git_merge_options opts = GIT_MERGE_OPTIONS_INIT;
+	git_checkout_options checkout_opts = GIT_CHECKOUT_OPTIONS_INIT;
+	git_buf conflicting_buf = GIT_BUF_INIT;
+
+	struct merge_index_entry merge_index_entries[] = {
+		{ 0100644, "ffb36e513f5fdf8a6ba850a20142676a2ac4807d", 0, "asparagus.txt" },
+		{ 0100644, "68f6182f4c85d39e1309d97c7e456156dc9c0096", 0, "beef.txt" },
+		{ 0100644, "4b7c5650008b2e747fe1809eeb5a1dde0e80850a", 0, "bouilli.txt" },
+		{ 0100644, "c4e6cca3ec6ae0148ed231f97257df8c311e015f", 0, "gravy.txt" },
+		{ 0100644, "68af1fc7407fd9addf1701a87eb1c95c7494c598", 0, "oyster.txt" },
+		{ 0100644, "cd17a91513f3aee9e44114d1ede67932dd41d2fc", 1, "veal.txt" },
+		{ 0100644, "d604c75019c282144bdbbf3fd3462ba74b240efc", 2, "veal.txt" },
+		{ 0100644, "37a5054a9f9b4628e3924c5cb8f2147c6e2a3efc", 3, "veal.txt" },
+	};
+
+	opts.file_flags |= GIT_MERGE_FILE_STYLE_DIFF3;
+	checkout_opts.checkout_strategy |= GIT_CHECKOUT_CONFLICT_STYLE_DIFF3;
+
+	cl_git_pass(merge_branches(repo, GIT_REFS_HEADS_DIR "branchH-1", GIT_REFS_HEADS_DIR "branchH-2", &opts, &checkout_opts));
+
+	cl_git_pass(git_repository_index(&index, repo));
+	cl_assert(merge_test_index(index, merge_index_entries, 8));
+
+	cl_git_pass(git_futils_readbuffer(&conflicting_buf, "merge-recursive/veal.txt"));
+
+	cl_assert_equal_s(CONFLICTING_RECURSIVE_H1_TO_H2_WITH_DIFF3, conflicting_buf.ptr);
+
+	git_index_free(index);
+	git_buf_free(&conflicting_buf);
+}
diff --git a/tests/resources/merge-recursive/.gitted/objects/15/311229e70fa62653f73dde1d4deef1a8e47a11 b/tests/resources/merge-recursive/.gitted/objects/15/311229e70fa62653f73dde1d4deef1a8e47a11
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diff --git a/tests/resources/merge-recursive/.gitted/objects/37/185b25a204309bf74817da1a607518f13ca3ed b/tests/resources/merge-recursive/.gitted/objects/37/185b25a204309bf74817da1a607518f13ca3ed
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diff --git a/tests/resources/merge-recursive/.gitted/objects/4f/4e85a0ab8515e34302721fbcec06fa9d9c1a9a b/tests/resources/merge-recursive/.gitted/objects/4f/4e85a0ab8515e34302721fbcec06fa9d9c1a9a
new file mode 100644
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diff --git a/tests/resources/merge-recursive/.gitted/objects/56/07a8c4601a737daadd1f470bde3142aff57026 b/tests/resources/merge-recursive/.gitted/objects/56/07a8c4601a737daadd1f470bde3142aff57026
new file mode 100644
index 0000000..bf3639d
--- /dev/null
+++ b/tests/resources/merge-recursive/.gitted/objects/56/07a8c4601a737daadd1f470bde3142aff57026
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new file mode 100644
index 0000000..e95a5e2
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+++ b/tests/resources/merge-recursive/.gitted/objects/6e/f31d35a3f5abc1e24f4f9afa5cb2016f03fa2d
@@ -0,0 +1 @@
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diff --git a/tests/resources/merge-recursive/.gitted/objects/7a/9277e0c5ec75339f011c176d0c20e513c4de1c b/tests/resources/merge-recursive/.gitted/objects/7a/9277e0c5ec75339f011c176d0c20e513c4de1c
new file mode 100644
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