thodg/libgit2

diff --git a/src/graph.c b/src/graph.c
index 8accd80..948f7d3 100644
--- a/src/graph.c
+++ b/src/graph.c
@@ -59,7 +59,7 @@ static int mark_parents(git_revwalk *walk, git_commit_list_node *one,
 	/* as long as there are non-STALE commits */
 	while (interesting(&list, roots)) {
 		git_commit_list_node *commit = git_pqueue_pop(&list);
-		int flags;
+		unsigned int flags;
 
 		if (commit == NULL)
 			break;
diff --git a/src/odb_mempack.c b/src/odb_mempack.c
index 594a278..68db3bc 100644
--- a/src/odb_mempack.c
+++ b/src/odb_mempack.c
@@ -24,7 +24,7 @@ struct memobject {
 	git_oid oid;
 	size_t len;
 	git_otype type;
-	char data[];
+	char data[GIT_FLEX_ARRAY];
 };
 
 struct memory_packer_db {
diff --git a/src/pack.c b/src/pack.c
index 2ee0c60..56de64d 100644
--- a/src/pack.c
+++ b/src/pack.c
@@ -509,8 +509,10 @@ int git_packfile_resolve_header(
 		git_packfile_stream_free(&stream);
 		if (error < 0)
 			return error;
-	} else
+	} else {
 		*size_p = size;
+		base_offset = 0;
+	}
 
 	while (type == GIT_OBJ_OFS_DELTA || type == GIT_OBJ_REF_DELTA) {
 		curpos = base_offset;
diff --git a/src/patch_generate.c b/src/patch_generate.c
index a13f2ff..0e5d1db 100644
--- a/src/patch_generate.c
+++ b/src/patch_generate.c
@@ -284,7 +284,7 @@ static int create_binary(
 	size_t b_datalen)
 {
 	git_buf deflate = GIT_BUF_INIT, delta = GIT_BUF_INIT;
-	size_t delta_data_len;
+	size_t delta_data_len = 0;
 	int error;
 
 	/* The git_delta function accepts unsigned long only */
diff --git a/src/path.c b/src/path.c
index 2b1a962..7675527 100644
--- a/src/path.c
+++ b/src/path.c
@@ -1145,7 +1145,6 @@ int git_path_diriter_init(
 	unsigned int flags)
 {
 	git_win32_path path_filter;
-	git_buf hack = {0};
 
 	static int is_win7_or_later = -1;
 	if (is_win7_or_later < 0)
diff --git a/src/revwalk.c b/src/revwalk.c
index 0ada587..f5502a7 100644
--- a/src/revwalk.c
+++ b/src/revwalk.c
@@ -290,7 +290,7 @@ static void mark_parents_uninteresting(git_commit_list_node *commit)
 
 
 	while (parents) {
-		git_commit_list_node *commit = git_commit_list_pop(&parents);
+		commit = git_commit_list_pop(&parents);
 
 		while (commit) {
 			if (commit->uninteresting)
diff --git a/src/transports/smart_protocol.c b/src/transports/smart_protocol.c
index c1e4124..53c0b08 100644
--- a/src/transports/smart_protocol.c
+++ b/src/transports/smart_protocol.c
@@ -412,12 +412,12 @@ int git_smart__negotiate_fetch(git_transport *transport, git_repository *repo, c
 
 		if (i % 20 == 0 && t->rpc) {
 			git_pkt_ack *pkt;
-			unsigned int i;
+			unsigned int j;
 
 			if ((error = git_pkt_buffer_wants(wants, count, &t->caps, &data)) < 0)
 				goto on_error;
 
-			git_vector_foreach(&t->common, i, pkt) {
+			git_vector_foreach(&t->common, j, pkt) {
 				if ((error = git_pkt_buffer_have(&pkt->oid, &data)) < 0)
 					goto on_error;
 			}
@@ -432,12 +432,12 @@ int git_smart__negotiate_fetch(git_transport *transport, git_repository *repo, c
 	/* Tell the other end that we're done negotiating */
 	if (t->rpc && t->common.length > 0) {
 		git_pkt_ack *pkt;
-		unsigned int i;
+		unsigned int j;
 
 		if ((error = git_pkt_buffer_wants(wants, count, &t->caps, &data)) < 0)
 			goto on_error;
 
-		git_vector_foreach(&t->common, i, pkt) {
+		git_vector_foreach(&t->common, j, pkt) {
 			if ((error = git_pkt_buffer_have(&pkt->oid, &data)) < 0)
 				goto on_error;
 		}
@@ -728,7 +728,7 @@ static int add_push_report_pkt(git_push *push, git_pkt *pkt)
 static int add_push_report_sideband_pkt(git_push *push, git_pkt_data *data_pkt, git_buf *data_pkt_buf)
 {
 	git_pkt *pkt;
-	const char *line, *line_end;
+	const char *line, *line_end = NULL;
 	size_t line_len;
 	int error;
 	int reading_from_buf = data_pkt_buf->size > 0;
diff --git a/tests/clar_libgit2.h b/tests/clar_libgit2.h
index 663d136..fc08bbf 100644
--- a/tests/clar_libgit2.h
+++ b/tests/clar_libgit2.h
@@ -79,7 +79,7 @@ typedef struct {
 	} \
 	} while (0)
 
-static void cl_git_thread_check(void *data)
+GIT_INLINE(void) cl_git_thread_check(void *data)
 {
 	cl_git_thread_err *threaderr = (cl_git_thread_err *)data;
 	if (threaderr->error != 0)