Hash :
f3c44083
Author :
Date :
2020-11-14T16:39:35
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/* Implementation of the Patience Diff algorithm invented by Bram Cohen:
* Divide a diff problem into smaller chunks by an LCS (Longest Common Sequence)
* of common-unique lines. */
/*
* Copyright (c) 2020 Neels Hofmeyr <neels@hofmeyr.de>
*
* Permission to use, copy, modify, and distribute this software for any
* purpose with or without fee is hereby granted, provided that the above
* copyright notice and this permission notice appear in all copies.
*
* THE SOFTWARE IS PROVIDED "AS IS" AND THE AUTHOR DISCLAIMS ALL WARRANTIES
* WITH REGARD TO THIS SOFTWARE INCLUDING ALL IMPLIED WARRANTIES OF
* MERCHANTABILITY AND FITNESS. IN NO EVENT SHALL THE AUTHOR BE LIABLE FOR
* ANY SPECIAL, DIRECT, INDIRECT, OR CONSEQUENTIAL DAMAGES OR ANY DAMAGES
* WHATSOEVER RESULTING FROM LOSS OF USE, DATA OR PROFITS, WHETHER IN AN
* ACTION OF CONTRACT, NEGLIGENCE OR OTHER TORTIOUS ACTION, ARISING OUT OF
* OR IN CONNECTION WITH THE USE OR PERFORMANCE OF THIS SOFTWARE.
*/
#include <assert.h>
#include <errno.h>
#include <stdbool.h>
#include <stdint.h>
#include <stdio.h>
#include <stdlib.h>
#include <arraylist.h>
#include <diff_main.h>
#include "diff_internal.h"
#include "diff_debug.h"
/* Algorithm to find unique lines:
* 0: stupidly iterate atoms
* 1: qsort
* 2: mergesort
*/
#define UNIQUE_STRATEGY 1
/* Per-atom state for the Patience Diff algorithm */
struct atom_patience {
#if UNIQUE_STRATEGY == 0
bool unique_here;
#endif
bool unique_in_both;
struct diff_atom *pos_in_other;
struct diff_atom *prev_stack;
struct diff_range identical_lines;
};
/* A diff_atom has a backpointer to the root diff_data. That points to the
* current diff_data, a possibly smaller section of the root. That current
* diff_data->algo_data is a pointer to an array of struct atom_patience. The
* atom's index in current diff_data gives the index in the atom_patience array.
*/
#define PATIENCE(ATOM) \
(((struct atom_patience*)((ATOM)->root->current->algo_data))\
[diff_atom_idx((ATOM)->root->current, ATOM)])
#if UNIQUE_STRATEGY == 0
/* Stupid iteration and comparison of all atoms */
static int
diff_atoms_mark_unique(struct diff_data *d, unsigned int *unique_count)
{
struct diff_atom *i;
unsigned int count = 0;
diff_data_foreach_atom(i, d) {
PATIENCE(i).unique_here = true;
PATIENCE(i).unique_in_both = true;
count++;
}
diff_data_foreach_atom(i, d) {
struct diff_atom *j;
if (!PATIENCE(i).unique_here)
continue;
diff_data_foreach_atom_from(i + 1, j, d) {
bool same;
int r = diff_atom_same(&same, i, j);
if (r)
return r;
if (!same)
continue;
if (PATIENCE(i).unique_here) {
PATIENCE(i).unique_here = false;
PATIENCE(i).unique_in_both = false;
count--;
}
PATIENCE(j).unique_here = false;
PATIENCE(j).unique_in_both = false;
count--;
}
}
if (unique_count)
*unique_count = count;
return 0;
}
/* Mark those lines as PATIENCE(atom).unique_in_both = true that appear exactly
* once in each side. */
static int
diff_atoms_mark_unique_in_both(struct diff_data *left, struct diff_data *right,
unsigned int *unique_in_both_count)
{
/* Derive the final unique_in_both count without needing an explicit
* iteration. So this is just some optimiziation to save one iteration
* in the end. */
unsigned int unique_in_both;
int r;
r = diff_atoms_mark_unique(left, &unique_in_both);
if (r)
return r;
r = diff_atoms_mark_unique(right, NULL);
if (r)
return r;
debug("unique_in_both %u\n", unique_in_both);
struct diff_atom *i;
diff_data_foreach_atom(i, left) {
if (!PATIENCE(i).unique_here)
continue;
struct diff_atom *j;
int found_in_b = 0;
diff_data_foreach_atom(j, right) {
bool same;
int r = diff_atom_same(&same, i, j);
if (r)
return r;
if (!same)
continue;
if (!PATIENCE(j).unique_here) {
found_in_b = 2; /* or more */
break;
} else {
found_in_b = 1;
PATIENCE(j).pos_in_other = i;
PATIENCE(i).pos_in_other = j;
}
}
if (found_in_b == 0 || found_in_b > 1) {
PATIENCE(i).unique_in_both = false;
unique_in_both--;
debug("unique_in_both %u (%d) ", unique_in_both,
found_in_b);
debug_dump_atom(left, NULL, i);
}
}
/* Still need to unmark right[*]->patience.unique_in_both for atoms that
* don't exist in left */
diff_data_foreach_atom(i, right) {
if (!PATIENCE(i).unique_here
|| !PATIENCE(i).unique_in_both)
continue;
struct diff_atom *j;
bool found_in_a = false;
diff_data_foreach_atom(j, left) {
bool same;
int r;
if (!PATIENCE(j).unique_in_both)
continue;
r = diff_atom_same(&same, i, j);
if (r)
return r;
if (!same)
continue;
found_in_a = true;
break;
}
if (!found_in_a)
PATIENCE(i).unique_in_both = false;
}
if (unique_in_both_count)
*unique_in_both_count = unique_in_both;
return 0;
}
#else /* UNIQUE_STRATEGY != 0 */
/* Use an optimized sorting algorithm (qsort, mergesort) to find unique lines */
int diff_atoms_compar(const void *_a, const void *_b)
{
const struct diff_atom *a = *(struct diff_atom**)_a;
const struct diff_atom *b = *(struct diff_atom**)_b;
int cmp;
int rc = 0;
/* If there's been an error (e.g. I/O error) in a previous compar, we
* have no way to abort the sort but just report the rc and stop
* comparing. Make sure to catch errors on either side. If atoms are
* from more than one diff_data, make sure the error, if any, spreads
* to all of them, so we can cut short all future comparisons. */
if (a->root->err)
rc = a->root->err;
if (b->root->err)
rc = b->root->err;
if (rc) {
a->root->err = rc;
b->root->err = rc;
/* just return 'equal' to not swap more positions */
return 0;
}
/* Sort by the simplistic hash */
if (a->hash < b->hash)
return -1;
if (a->hash > b->hash)
return 1;
/* If hashes are the same, the lines may still differ. Do a full cmp. */
rc = diff_atom_cmp(&cmp, a, b);
if (rc) {
/* Mark the I/O error so that the caller can find out about it.
* For the case atoms are from more than one diff_data, mark in
* both. */
a->root->err = rc;
if (a->root != b->root)
b->root->err = rc;
return 0;
}
return cmp;
}
/* Sort an array of struct diff_atom* in-place. */
static int diff_atoms_sort(struct diff_atom *atoms[],
size_t atoms_count)
{
#if UNIQUE_STRATEGY == 1
qsort(atoms, atoms_count, sizeof(struct diff_atom*), diff_atoms_compar);
#else
mergesort(atoms, atoms_count, sizeof(struct diff_atom*),
diff_atoms_compar);
#endif
return atoms[0]->root->err;
}
static int
diff_atoms_mark_unique_in_both(struct diff_data *left, struct diff_data *right,
unsigned int *unique_in_both_count_p)
{
struct diff_atom *a;
struct diff_atom *b;
struct diff_atom **all_atoms;
unsigned int len = 0;
unsigned int i;
unsigned int unique_in_both_count = 0;
int rc;
all_atoms = calloc(left->atoms.len + right->atoms.len,
sizeof(struct diff_atom *));
if (all_atoms == NULL)
return ENOMEM;
left->err = 0;
right->err = 0;
left->root->err = 0;
right->root->err = 0;
diff_data_foreach_atom(a, left) {
all_atoms[len++] = a;
}
diff_data_foreach_atom(b, right) {
all_atoms[len++] = b;
}
rc = diff_atoms_sort(all_atoms, len);
if (rc)
goto free_and_exit;
/* Now we have a sorted array of atom pointers. All similar lines are
* adjacent. Walk through the array and mark those that are unique on
* each side, but exist once in both sources. */
for (i = 0; i < len; i++) {
bool same;
unsigned int next_differing_i;
unsigned int last_identical_i;
unsigned int j;
unsigned int count_first_side = 1;
unsigned int count_other_side = 0;
a = all_atoms[i];
debug("a: ");
debug_dump_atom(a->root, NULL, a);
/* Do as few diff_atom_cmp() as possible: first walk forward
* only using the cheap hash as indicator for differing atoms;
* then walk backwards until hitting an identical atom. */
for (next_differing_i = i + 1; next_differing_i < len;
next_differing_i++) {
b = all_atoms[next_differing_i];
if (a->hash != b->hash)
break;
}
for (last_identical_i = next_differing_i - 1;
last_identical_i > i;
last_identical_i--) {
b = all_atoms[last_identical_i];
rc = diff_atom_same(&same, a, b);
if (rc)
goto free_and_exit;
if (same)
break;
}
next_differing_i = last_identical_i + 1;
for (j = i+1; j < next_differing_i; j++) {
b = all_atoms[j];
/* A following atom is the same. See on which side the
* repetition counts. */
if (a->root == b->root)
count_first_side ++;
else
count_other_side ++;
debug("b: ");
debug_dump_atom(b->root, NULL, b);
debug(" count_first_side=%d count_other_side=%d\n",
count_first_side, count_other_side);
}
/* Counted a section of similar atoms, put the results back to
* the atoms. */
if ((count_first_side == 1)
&& (count_other_side == 1)) {
b = all_atoms[i+1];
PATIENCE(a).unique_in_both = true;
PATIENCE(a).pos_in_other = b;
PATIENCE(b).unique_in_both = true;
PATIENCE(b).pos_in_other = a;
unique_in_both_count++;
}
/* j now points at the first atom after 'a' that is not
* identical to 'a'. j is always > i. */
i = j - 1;
}
*unique_in_both_count_p = unique_in_both_count;
rc = 0;
free_and_exit:
free(all_atoms);
return rc;
}
#endif /* UNIQUE_STRATEGY != 0 */
static int
diff_atoms_swallow_identical_neighbors(struct diff_data *left,
struct diff_data *right,
unsigned int *unique_in_both_count)
{
debug("trivially combine identical lines"
" around unique_in_both lines\n");
unsigned int l_idx;
unsigned int next_l_idx;
/* Only checking against identical-line overlaps on the left; overlaps
* on the right are tolerated and ironed out later. See also the other
* place marked with (1). */
unsigned int l_min = 0;
for (l_idx = 0; l_idx < left->atoms.len; l_idx = next_l_idx) {
next_l_idx = l_idx + 1;
struct diff_atom *l = &left->atoms.head[l_idx];
struct diff_atom *r;
if (!PATIENCE(l).unique_in_both)
continue;
debug("check identical lines around\n");
debug(" L "); debug_dump_atom(left, right, l);
unsigned int r_idx = diff_atom_idx(right, PATIENCE(l).pos_in_other);
r = &right->atoms.head[r_idx];
debug(" R "); debug_dump_atom(right, left, r);
struct diff_range identical_l;
struct diff_range identical_r;
/* Swallow upwards.
* Each common-unique line swallows identical lines upwards and
* downwards.
* Will never hit another identical common-unique line above on
* the left, because those would already have swallowed this
* common-unique line in a previous iteration.
*/
for (identical_l.start = l_idx, identical_r.start = r_idx;
identical_l.start > (l_min+1) && identical_r.start > 0;
identical_l.start--, identical_r.start--) {
bool same;
int rc = diff_atom_same(&same,
&left->atoms.head[identical_l.start - 1],
&right->atoms.head[identical_r.start - 1]);
if (rc)
return rc;
if (!same)
break;
}
/* Swallow downwards. Join any common-unique lines in a block of
* matching L/R lines with this one. */
for (identical_l.end = l_idx + 1, identical_r.end = r_idx + 1;
identical_l.end < left->atoms.len
&& identical_r.end < right->atoms.len;
identical_l.end++, identical_r.end++,
next_l_idx++) {
struct diff_atom *l_end;
struct diff_atom *r_end;
bool same;
int rc = diff_atom_same(&same,
&left->atoms.head[identical_l.end],
&right->atoms.head[identical_r.end]);
if (rc)
return rc;
if (!same)
break;
l_end = &left->atoms.head[identical_l.end];
r_end = &right->atoms.head[identical_r.end];
if (!PATIENCE(l_end).unique_in_both)
continue;
/* A unique_in_both atom is joined with a preceding
* unique_in_both atom, remove the joined atom from
* listing of unique_in_both atoms */
PATIENCE(l_end).unique_in_both = false;
PATIENCE(r_end).unique_in_both = false;
(*unique_in_both_count)--;
}
PATIENCE(l).identical_lines = identical_l;
PATIENCE(r).identical_lines = identical_r;
l_min = identical_l.end;
if (!diff_range_empty(&PATIENCE(l).identical_lines)) {
debug("common-unique line at l=%u r=%u swallowed"
" identical lines l=%u-%u r=%u-%u\n",
l_idx, r_idx,
identical_l.start, identical_l.end,
identical_r.start, identical_r.end);
}
debug("next_l_idx = %u\n", next_l_idx);
}
return 0;
}
/* binary search to find the stack to put this atom "card" on. */
static int
find_target_stack(struct diff_atom *atom,
struct diff_atom **patience_stacks,
unsigned int patience_stacks_count)
{
unsigned int lo = 0;
unsigned int hi = patience_stacks_count;
while (lo < hi) {
unsigned int mid = (lo + hi) >> 1;
if (PATIENCE(patience_stacks[mid]).pos_in_other
< PATIENCE(atom).pos_in_other)
lo = mid + 1;
else
hi = mid;
}
return lo;
}
/* Among the lines that appear exactly once in each side, find the longest
* streak that appear in both files in the same order (with other stuff allowed
* to interleave). Use patience sort for that, as in the Patience Diff
* algorithm.
* See https://bramcohen.livejournal.com/73318.html and, for a much more
* detailed explanation,
* https://blog.jcoglan.com/2017/09/19/the-patience-diff-algorithm/ */
int
diff_algo_patience(const struct diff_algo_config *algo_config,
struct diff_state *state)
{
int rc;
struct diff_data *left = &state->left;
struct diff_data *right = &state->right;
struct atom_patience *atom_patience_left =
calloc(left->atoms.len, sizeof(struct atom_patience));
struct atom_patience *atom_patience_right =
calloc(right->atoms.len, sizeof(struct atom_patience));
unsigned int unique_in_both_count;
struct diff_atom **lcs = NULL;
debug("\n** %s\n", __func__);
left->root->current = left;
right->root->current = right;
left->algo_data = atom_patience_left;
right->algo_data = atom_patience_right;
/* Find those lines that appear exactly once in 'left' and exactly once
* in 'right'. */
rc = diff_atoms_mark_unique_in_both(left, right, &unique_in_both_count);
if (rc)
goto free_and_exit;
debug("unique_in_both_count %u\n", unique_in_both_count);
debug("left:\n");
debug_dump(left);
debug("right:\n");
debug_dump(right);
if (!unique_in_both_count) {
/* Cannot apply Patience, tell the caller to use fallback_algo
* instead. */
rc = DIFF_RC_USE_DIFF_ALGO_FALLBACK;
goto free_and_exit;
}
rc = diff_atoms_swallow_identical_neighbors(left, right,
&unique_in_both_count);
if (rc)
goto free_and_exit;
debug("After swallowing identical neighbors: unique_in_both = %u\n",
unique_in_both_count);
rc = ENOMEM;
/* An array of Longest Common Sequence is the result of the below
* subscope: */
unsigned int lcs_count = 0;
struct diff_atom *lcs_tail = NULL;
{
/* This subscope marks the lifetime of the atom_pointers
* allocation */
/* One chunk of storage for atom pointers */
struct diff_atom **atom_pointers;
atom_pointers = recallocarray(NULL, 0, unique_in_both_count * 2,
sizeof(struct diff_atom*));
if (atom_pointers == NULL)
return ENOMEM;
/* Half for the list of atoms that still need to be put on
* stacks */
struct diff_atom **uniques = atom_pointers;
/* Half for the patience sort state's "card stacks" -- we
* remember only each stack's topmost "card" */
struct diff_atom **patience_stacks;
patience_stacks = atom_pointers + unique_in_both_count;
unsigned int patience_stacks_count = 0;
/* Take all common, unique items from 'left' ... */
struct diff_atom *atom;
struct diff_atom **uniques_end = uniques;
diff_data_foreach_atom(atom, left) {
if (!PATIENCE(atom).unique_in_both)
continue;
*uniques_end = atom;
uniques_end++;
}
/* ...and sort them to the order found in 'right'.
* The idea is to find the leftmost stack that has a higher line
* number and add it to the stack's top.
* If there is no such stack, open a new one on the right. The
* line number is derived from the atom*, which are array items
* and hence reflect the relative position in the source file.
* So we got the common-uniques from 'left' and sort them
* according to PATIENCE(atom).pos_in_other. */
unsigned int i;
for (i = 0; i < unique_in_both_count; i++) {
atom = uniques[i];
unsigned int target_stack;
target_stack = find_target_stack(atom, patience_stacks,
patience_stacks_count);
assert(target_stack <= patience_stacks_count);
patience_stacks[target_stack] = atom;
if (target_stack == patience_stacks_count)
patience_stacks_count++;
/* Record a back reference to the next stack on the
* left, which will form the final longest sequence
* later. */
PATIENCE(atom).prev_stack = target_stack ?
patience_stacks[target_stack - 1] : NULL;
{
int xx;
for (xx = 0; xx < patience_stacks_count; xx++) {
debug(" %s%d",
(xx == target_stack) ? ">" : "",
diff_atom_idx(right,
PATIENCE(patience_stacks[xx]).pos_in_other));
}
debug("\n");
}
}
/* backtrace through prev_stack references to form the final
* longest common sequence */
lcs_tail = patience_stacks[patience_stacks_count - 1];
lcs_count = patience_stacks_count;
/* uniques and patience_stacks are no longer needed.
* Backpointers are in PATIENCE(atom).prev_stack */
free(atom_pointers);
}
lcs = recallocarray(NULL, 0, lcs_count, sizeof(struct diff_atom*));
struct diff_atom **lcs_backtrace_pos = &lcs[lcs_count - 1];
struct diff_atom *atom;
for (atom = lcs_tail; atom; atom = PATIENCE(atom).prev_stack, lcs_backtrace_pos--) {
assert(lcs_backtrace_pos >= lcs);
*lcs_backtrace_pos = atom;
}
unsigned int i;
if (DEBUG) {
debug("\npatience LCS:\n");
for (i = 0; i < lcs_count; i++) {
debug("\n L "); debug_dump_atom(left, right, lcs[i]);
debug(" R "); debug_dump_atom(right, left,
PATIENCE(lcs[i]).pos_in_other);
}
}
/* TODO: For each common-unique line found (now listed in lcs), swallow
* lines upwards and downwards that are identical on each side. Requires
* a way to represent atoms being glued to adjacent atoms. */
debug("\ntraverse LCS, possibly recursing:\n");
/* Now we have pinned positions in both files at which it makes sense to
* divide the diff problem into smaller chunks. Go into the next round:
* look at each section in turn, trying to again find common-unique
* lines in those smaller sections. As soon as no more are found, the
* remaining smaller sections are solved by Myers. */
/* left_pos and right_pos are indexes in left/right->atoms.head until
* which the atoms are already handled (added to result chunks). */
unsigned int left_pos = 0;
unsigned int right_pos = 0;
for (i = 0; i <= lcs_count; i++) {
struct diff_atom *atom;
struct diff_atom *atom_r;
/* left_idx and right_idx are indexes of the start of this
* section of identical lines on both sides.
* left_pos marks the index of the first still unhandled line,
* left_idx is the start of an identical section some way
* further down, and this loop adds an unsolved chunk of
* [left_pos..left_idx[ and a solved chunk of
* [left_idx..identical_lines.end[. */
unsigned int left_idx;
unsigned int right_idx;
int already_done_count = 0;
debug("iteration %u of %u left_pos %u right_pos %u\n",
i, lcs_count, left_pos, right_pos);
if (i < lcs_count) {
atom = lcs[i];
atom_r = PATIENCE(atom).pos_in_other;
debug("lcs[%u] = left[%u] = right[%u]\n", i,
diff_atom_idx(left, atom), diff_atom_idx(right, atom_r));
left_idx = PATIENCE(atom).identical_lines.start;
right_idx = PATIENCE(atom_r).identical_lines.start;
debug(" identical lines l %u-%u r %u-%u\n",
PATIENCE(atom).identical_lines.start, PATIENCE(atom).identical_lines.end,
PATIENCE(atom_r).identical_lines.start, PATIENCE(atom_r).identical_lines.end);
} else {
/* There are no more identical lines until the end of
* left and right. */
atom = NULL;
atom_r = NULL;
left_idx = left->atoms.len;
right_idx = right->atoms.len;
}
if (right_idx < right_pos) {
/* This may happen if common-unique lines were in a
* different order on the right, and then ended up
* consuming the same identical atoms around a pair of
* common-unique atoms more than once.
* See also marker the other place marked with (1). */
already_done_count = right_pos - right_idx;
left_idx += already_done_count;
right_idx += already_done_count;
/* Paranoia: make sure we're skipping just an
* additionally joined identical line around it, and not
* the common-unique line itself. */
assert(left_idx <= diff_atom_idx(left, atom));
}
/* 'atom' (if not NULL) now marks an atom that matches on both
* sides according to patience-diff (a common-unique identical
* atom in both files).
* Handle the section before and the atom itself; the section
* after will be handled by the next loop iteration -- note that
* i loops to last element + 1 ("i <= lcs_count"), so that there
* will be another final iteration to pick up the last remaining
* items after the last LCS atom.
*/
debug("iteration %u left_pos %u left_idx %u"
" right_pos %u right_idx %u\n",
i, left_pos, left_idx, right_pos, right_idx);
/* Section before the matching atom */
struct diff_atom *left_atom = &left->atoms.head[left_pos];
unsigned int left_section_len = left_idx - left_pos;
struct diff_atom *right_atom = &(right->atoms.head[right_pos]);
unsigned int right_section_len = right_idx - right_pos;
if (left_section_len && right_section_len) {
/* Record an unsolved chunk, the caller will apply
* inner_algo() on this chunk. */
if (!diff_state_add_chunk(state, false,
left_atom, left_section_len,
right_atom,
right_section_len))
goto free_and_exit;
} else if (left_section_len && !right_section_len) {
/* Only left atoms and none on the right, they form a
* "minus" chunk, then. */
if (!diff_state_add_chunk(state, true,
left_atom, left_section_len,
right_atom, 0))
goto free_and_exit;
} else if (!left_section_len && right_section_len) {
/* No left atoms, only atoms on the right, they form a
* "plus" chunk, then. */
if (!diff_state_add_chunk(state, true,
left_atom, 0,
right_atom, right_section_len))
goto free_and_exit;
}
/* else: left_section_len == 0 and right_section_len == 0, i.e.
* nothing here. */
/* The atom found to match on both sides forms a chunk of equals
* on each side. In the very last iteration of this loop, there
* is no matching atom, we were just cleaning out the remaining
* lines. */
if (atom) {
void *ok;
unsigned int left_start = PATIENCE(atom).identical_lines.start;
unsigned int left_len = diff_range_len(&PATIENCE(atom).identical_lines);
unsigned int right_start = PATIENCE(atom_r).identical_lines.start;
unsigned int right_len = diff_range_len(&PATIENCE(atom_r).identical_lines);
left_start += already_done_count;
left_len -= already_done_count;
right_start += already_done_count;
right_len -= already_done_count;
ok = diff_state_add_chunk(state, true,
left->atoms.head + left_start, left_len,
right->atoms.head + right_start, right_len);
if (!ok)
goto free_and_exit;
left_pos = PATIENCE(atom).identical_lines.end;
right_pos = PATIENCE(atom_r).identical_lines.end;
} else {
left_pos = left_idx + 1;
right_pos = right_idx + 1;
}
debug("end of iteration %u left_pos %u left_idx %u"
" right_pos %u right_idx %u\n",
i, left_pos, left_idx, right_pos, right_idx);
}
debug("** END %s\n", __func__);
rc = DIFF_RC_OK;
free_and_exit:
left->root->current = NULL;
right->root->current = NULL;
free(atom_patience_left);
free(atom_patience_right);
if (lcs)
free(lcs);
return rc;
}